A Construction of Pooling Designs with Some Happy Surprises

نویسندگان

  • Arkadii G. D'yachkov
  • Frank K. Hwang
  • Anthony J. Macula
  • Pavel A. Vilenkin
  • Chih-Wen Weng
چکیده

The screening of data sets for "positive data objects" is essential to modern technology. A (group) test that indicates whether a positive data object is in a specific subset or pool of the dataset can greatly facilitate the identification of all the positive data objects. A collection of tested pools is called a pooling design. Pooling designs are standard experimental tools in many biotechnical applications. In this paper, we use the (linear) subspace relation coupled with the general concept of a "containment matrix" to construct pooling designs with surprisingly high degrees of error correction (detection.) Error-correcting pooling designs are important to biotechnical applications where error rates often are as high as 15%. What is also surprising is that the rank of the pooling design containment matrix is independent of the number of positive data objects in the dataset.

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عنوان ژورنال:
  • Journal of computational biology : a journal of computational molecular cell biology

دوره 12 8  شماره 

صفحات  -

تاریخ انتشار 2005